Difference between revisions of "Papers, Theses, and Presentations"

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(SAT-Based Algorithms)
(Computing with Molecules)
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| width="500" | [[Media:Kharam_Jiang_Riedel_Parhi_Binary_Counting_with_Chemical_Reactions.pdf | Binary Counting with Chemical Reactions]]
 
| width="500" | [[Media:Kharam_Jiang_Riedel_Parhi_Binary_Counting_with_Chemical_Reactions.pdf | Binary Counting with Chemical Reactions]]
 
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| width="500" | [[Media:Senum_Riedel_Rate-Independent_Constructs_for_Chemical_Computation.pdf | Rate-Independent Constructs for Chemical Computation]]
 
| width="500" | [[Media:Senum_Riedel_Rate-Independent_Constructs_for_Chemical_Computation.pdf | Rate-Independent Constructs for Chemical Computation]]
 
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| width="500" | [[Media:Jiang_Kharam_Riedel_Parhi_A_Synthesis_Flow_for_Digital_Signal_Processing_with_Biomolecular_Reactions.pdf | A Synthesis Flow for Digital Signal Processing with Biomolecular Reactions]]
 
| width="500" | [[Media:Jiang_Kharam_Riedel_Parhi_A_Synthesis_Flow_for_Digital_Signal_Processing_with_Biomolecular_Reactions.pdf | A Synthesis Flow for Digital Signal Processing with Biomolecular Reactions]]
 
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| width="500" | [[Media:Shea_Fett_Riedel_Parhi_Writing_and_Compiling_code_into_Biochemistry.pdf | Writing and Compiling Code into Biochemistry]]
 
| width="500" | [[Media:Shea_Fett_Riedel_Parhi_Writing_and_Compiling_code_into_Biochemistry.pdf | Writing and Compiling Code into Biochemistry]]
 
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| width="500" | [[Media:Fett_Fitzgerald_Shea_Riedel_Nearly_Rate_Independent_Synthesis_of_Stochastic_Biochemical_Computation.pdf |[''nearly''] Rate Independent Synthesis of Stochastic Biochemical Computation]]
 
| width="500" | [[Media:Fett_Fitzgerald_Shea_Riedel_Nearly_Rate_Independent_Synthesis_of_Stochastic_Biochemical_Computation.pdf |[''nearly''] Rate Independent Synthesis of Stochastic Biochemical Computation]]
 
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| width="500" | [[Media:Cheng_Riedel_Stochastic_Transient_Analysis_of_Biochemical_Systems.pdf | Stochastic Transient Analysis of Biochemical Systems]]
 
| width="500" | [[Media:Cheng_Riedel_Stochastic_Transient_Analysis_of_Biochemical_Systems.pdf | Stochastic Transient Analysis of Biochemical Systems]]
 
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| [[Media:Fett_Riedel_Module_Locking_in_Biochemical_Synthesis.pdf | Module Locking in Biochemical Systems]]
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|  width="500" | [[Media:Fett_Riedel_Module_Locking_in_Biochemical_Synthesis.pdf | Module Locking in Biochemical Systems]]
 
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| [[Media:Fett_Bruck_Riedel_Synthesizing_Stochasticity_in_Biochemical_Systems.pdf | Synthesizing Stochasticity in Biochemical Systems]]
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|  width="500" | [[Media:Fett_Bruck_Riedel_Synthesizing_Stochasticity_in_Biochemical_Systems.pdf | Synthesizing Stochasticity in Biochemical Systems]]
 
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| [[Media:Fett_Riedel_Characterizing_the_Stochastic_Decisions_of_Biochemical_Systems_with_Probability_Gradients.pdf | Characterizing Biochemical Systems with Probability Gradients]]
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| width="500" | '''title''': [[Media:Fett_Riedel_Characterizing_the_Stochastic_Decisions_of_Biochemical_Systems_with_Probability_Gradients.pdf | Characterizing Biochemical Systems with Probability Gradients]]
 
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| [[Media:Riedel_Bruck_Exact_Stochastic_Simulation_with_Event_Leaping.pdf | Exact Stochastic Simulation with Event Leaping]]
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| width="500" | '''title''': [[Media:Riedel_Bruck_Exact_Stochastic_Simulation_with_Event_Leaping.pdf | Exact Stochastic Simulation with Event Leaping]]
 
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Revision as of 16:45, 20 January 2011

All materials are subject to copyrights.

Computing with Molecules

title: Binary Counting with Chemical Reactions
authors: Aleksandra Kharam, Hua Jiang, Marc Riedel and Keshab Parhi
presented at: Pacific Symposium on Biocomputing, Hawaii, 2011.

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Paper

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Slides

title: Rate-Independent Constructs for Chemical Computation
authors: Phil Senum and Marc Riedel
presented at: Pacific Symposium on Biocomputing, Hawaii, 2011.

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Paper

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Slides

title: A Synthesis Flow for Digital Signal Processing with Biomolecular Reactions
authors: Hua Jiang, Aleksandra Kharam, Marc Riedel and Keshab Parhi
presented at: IEEE Workshop on Signal Processing Systems, Cupertino, CA, 2010 and International Conference on Computer-Aided Design, San Jose, CA, 2010.

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Paper

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Slides

title: Writing and Compiling Code into Biochemistry
authors: Adam Shea, Brian Fett, Marc Riedel, and Keshab Parhi
presented at: Pacific Symposium on Biocomputing, Kona, Hawaii, 2010 (also see blog);
International Conference on Computer-Aided Design , San Jose, CA, 2009.

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Paper

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Slides

title: [nearly] Rate Independent Synthesis of Stochastic Biochemical Computation
authors: Brian Fett, Adam Shea, and Marc Riedel
presented at: Institute of Biological Engineering Annual Conference, Santa Clara, CA, 2009.

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Abstract

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Slides

title: Stochastic Transient Analysis of Biochemical Systems
authors: Bin Cheng and Marc Riedel
presented at: Pacific Symposium on Biocomputing, Hawaii, 2009.

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Paper

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M.S. Thesis

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Slides

title: Module Locking in Biochemical Systems
authors: Brian Fett and Marc Riedel
presented at: International Conference on Computer-Aided Design, San Jose, CA, 2008; Synthetic Biology 4.0, Hong Kong, 2008.
       

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Paper

       

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Slides

title: Synthesizing Stochasticity in Biochemical Systems
authors: Brian Fett, Shuki Bruck, and Marc Riedel
presented at: Design Automation Conference, San Diego, 2007; Synthetic Biology 3.0, Zürich, 2007.
       

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Paper

       

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Slides

       

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Video

title: title: Characterizing Biochemical Systems with Probability Gradients
authors: Brian Fett and Marc Riedel
presented at: International Conference on Systems Biology, Yokohama, Japan, 2006.
       

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Abstract

title: title: Exact Stochastic Simulation with Event Leaping
authors: Marc Riedel and Shuki Bruck
presented at: International Conference on Systems Biology, Boston, 2005.
       

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Abstract

       

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Slides

Computing with Random Bit Streams

title: Synthesizing Logical Computation on Stochastic Bit Streams
authors: Weikang Qian and Marc Riedel
submitted to: Communications of the ACM Research Highlight.

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Paper

title: Transforming Probabilities with Combinational Logic
authors: Weikang Qian, Marc Riedel, Hongchao Zhou, and Jehoshua Bruck
submitted to: IEEE Transactions on Computer-Aided Design of Integrated Circuits and Systems.

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Paper

title: Uniform Approximation and Bernstein Polynomials with Coefficients in the Unit Interval
authors: Weikang Qian, Marc Riedel, and Ivo Rosenberg
appeared in: European Journal of Combinatorics, Vol. 32, pp. 448–463, 2011.

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Paper

title: An Architecture for Fault-Tolerant Computation with Stochastic Logic
authors: Weikang Qian, Xin Li, Marc Riedel, Kia Bazargan, and David Lilja
will appear in: IEEE Transactions on Computers, 2011.

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Paper

title: Synthesizing Combinational Logic to Generate Probabilities: Theories and Algorithms
authors: Weikang Qian, Marc Riedel, Kia Bazargan, and David Lilja
will appear in: Advanced Techniques in Logic Synthesis, Optimizations and Applications
Sunil Khatri and Kanupriya Gulati editors, Springer Publishing, 2010.

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Paper

title: The Synthesis of Stochastic Circuits for Nanoscale Computation
authors: Weikang Qian, John Backes, and Marc Riedel
appeared in: International Journal of Nanotechnology and Molecular Computation, 2010.

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Paper

title: Two-Level Logic Synthesis for Probabilistic Computation
authors: Weikang Qian and Marc Riedel
presented at: International Workshop on Logic and Synthesis, Irvine, CA, 2010

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Paper

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Poster

title: Synthesizing Cubes to Satisfy a Given Intersection Pattern
authors: Weikang Qian and Marc Riedel
presented at: International Workshop on Logic and Synthesis, Irvine, CA, 2010

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Paper

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Slides

title: The Synthesis of Combinational Logic to Generate Probabilities
authors: Weikang Qian, Marc Riedel, Kia Bazargan, and David Lilja
presented at: International Conference on Computer-Aided Design, San Jose, 2009
nominated for IEEE/ACM William J. McCalla ICCAD Best Paper Award

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Paper

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Slides

title: A Reconfigurable Stochastic Architecture for Highly Reliable Computing
authors: Xin Li, Weikang Qian, Marc Riedel, Kia Bazargan, and David Lilja
presented at: Great Lakes Symposium on VLSI, Boston, MA, 2009

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Paper

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Slides

title: Estimation and Optimization of Reliability of Noisy Digital Circuits
authors: Satish Sivaswamy, Kia Bazargan and Marc Riedel
presented at: International Symposium on Quality Electronic Design, San Jose, CA, 2009.

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Paper

title: The Synthesis of Robust Polynomial Arithmetic with Stochastic Logic
authors: Weikang Qian and Marc Riedel
presented at: Design Automation Conference, Anaheim, CA, 2008

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Paper

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Slides

title: The Synthesis of Stochastic Logic to Perform Multivariate Polynomial Arithmetic
authors: Weikang Qian and Marc Riedel
presented at: International Workshop on Logic and Synthesis, Lake Tahoe, CA, 2008

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Paper

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Poster

title: The Synthesis of Stochastic Circuits for Nanoscale Computation
authors: Weikang Qian, John Backes, and Marc Riedel
presented at: International Workshop on Logic and Synthesis, San Diego, CA, 2007.

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Paper

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Slides

Computing with Nanoscale Lattices

title: Logic Synthesis for Switching Lattices
authors: Mustafa Altun and Marc Riedel
submitted to: IEEE Transactions on Computers.

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Paper

title: Lattice-Based Computation of Boolean Functions
authors: Mustafa Altun and Marc Riedel
presented at: Design Automation Conference, Anaheim, CA, 2010.

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Paper

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Slides

title: Nanoscale Digital Computation Through Percolation
authors: Mustafa Altun, Marc Riedel, and Claudia Neuhauser
presented at: Design Automation Conference, San Francisco, CA, 2009.

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Abstract

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Slides

Computing with Feedback

title: The Analysis and Mapping of Cyclic Circuits with Boolean Satisfiability
authors: John Backes, Brian Fett and Marc Riedel
submitted to: IEEE Transactions on Computer-Aided Design of Integrated Circuits and Systems
       

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Paper

title: Cyclic Boolean Circuits
authors: Marc Riedel and Shuki Bruck
will appear  in: Journal of Discrete Applied Mathematics, 2011.
       

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Paper

       

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PhD Dissertation

       

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Slides

title: The Analysis of Cyclic Circuits with Boolean Satisfiability
authors: John Backes, Brian Fett, and Marc Riedel
presented at: The International Conference on Computer-Aided Design, San Jose, CA, 2008.
       

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Paper

       

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Slides

title: Timing Analysis of Cyclic Combinational Circuits
authors: Marc Riedel and Shuki Bruck
presented at: The International Workshop on Logic and Synthesis, Temecula, CA, 2004.
       

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Paper

       

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Slides

title: The Synthesis of Cyclic Combinational Circuits
authors: Marc Riedel and Shuki Bruck
presented at: Design Automation Conference, Anahiem, CA, 2003.
       

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Paper

       

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Abstract

       

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Slides

SAT-Based Algorithms

title: Reduction of Interpolants For Logic Synthesis
authors: John Backes and Marc Riedel
presented at: International Workshop on Logic and Synthesis, Irvine, CA, 2010.
to be presented at: The International Conference on Computer-Aided Design, San Jose, CA, 2010.

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Paper

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Slides

title: The Synthesis of Cyclic Dependencies with Craig Interpolation
authors: John Backes and Marc Riedel
presented at: International Workshop on Logic and Synthesis, Berkeley, CA, 2009.

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Paper

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Slides