Difference between revisions of "Papers, Theses, and Presentations"

From The Circuits and Biology Lab at UMN
Jump to navigationJump to search
(Computing with Feedback)
(Computing with Feedback)
Line 637: Line 637:
 
|}
 
|}
  
| |        
 
  
 
| align=center |  
 
| align=center |  

Revision as of 17:40, 17 June 2011

All materials are subject to copyrights.

Computing with Molecules

title: Digital Logic with Molecular Reactions
authors: Hua Jiang, Marc Riedel and Keshab Parhi
Submitted:

Pdf.jpg
Paper

title: Rate-Independent Constructs for Chemical Computation
authors: Phil Senum and Marc Riedel
will appear in: PLoS ONE, 2011.

Pdf.jpg
Paper

Ppt.jpg
Slides

title: Synchronous Sequential Computation with Molecular Reactions
authors: Hua Jiang, Marc Riedel and Keshab Parhi
presented at: Design Automation Conference, San Diego, CA, 2011.

Pdf.jpg
Paper

Ppt.jpg
Slides

title: Binary Counting with Chemical Reactions
authors: Aleksandra Kharam, Hua Jiang, Marc Riedel and Keshab Parhi
presented at: Pacific Symposium on Biocomputing, Hawaii, 2011.

Pdf.jpg
Paper

Ppt.jpg
Slides

title: Digital Signal Processing with Biomolecular Reactions
authors: Hua Jiang, Aleksandra Kharam, Marc Riedel and Keshab Parhi
presented at: International Conference on Computer-Aided Design, San Jose, CA, 2010.

Pdf.jpg
Paper

Ppt.jpg
Slides

title: Writing and Compiling Code into Biochemistry
authors: Adam Shea, Brian Fett, Marc Riedel, and Keshab Parhi
presented at: International Conference on Computer-Aided Design , San Jose, CA, 2009; and at
Pacific Symposium on Biocomputing, Kona, Hawaii, 2010 (see blog).

Pdf.jpg
Paper

Ppt.jpg
Slides

title: Stochastic Transient Analysis of Biochemical Systems
authors: Bin Cheng and Marc Riedel
presented at: Pacific Symposium on Biocomputing, Hawaii, 2009.

Pdf.jpg
Paper

Ppt.jpg
Slides

Pdf.jpg
M.S. Thesis

title: Module Locking in Biochemical Systems
authors: Brian Fett and Marc Riedel
presented at: International Conference on Computer-Aided Design, San Jose, CA, 2008; and at
Synthetic Biology 4.0, Hong Kong, 2008.

Pdf.jpg
Paper

Ppt.jpg
Slides

title: Synthesizing Stochasticity in Biochemical Systems
authors: Brian Fett, Shuki Bruck, and Marc Riedel
presented at: Design Automation Conference, San Diego, 2007; and at
Synthetic Biology 3.0, Zürich, 2007.

Pdf.jpg
Paper

Ppt.jpg
Slides

M4v.jpg
Video

Pdf.jpg
M.S. Thesis

title: Exact Stochastic Simulation with Event Leaping
authors: Marc Riedel and Shuki Bruck
presented at: International Conference on Systems Biology, Boston, 2005.

Pdf.jpg
Abstract

Ppt.jpg
Slides

Computing with Random Bit Streams

title: Synthesizing Logical Computation on Stochastic Bit Streams
authors: Weikang Qian and Marc Riedel
nominated for: Communications of the ACM Research Highlights, 2010.

Pdf.jpg
Paper

title: Transforming Probabilities with Combinational Logic
authors: Weikang Qian, Marc Riedel, Hongchao Zhou, and Jehoshua Bruck
will appear in: IEEE Trans. on Computer-Aided Design of Integrated Circuits and Systems, 2011.

Pdf.jpg
Paper

title: An Architecture for Fault-Tolerant Computation with Stochastic Logic
authors: Weikang Qian, Xin Li, Marc Riedel, Kia Bazargan, and David Lilja
appeared in: IEEE Transactions on Computers, vol. 60, no. 1, pp. 93–105, 2011.

Pdf.jpg
Paper

title: Synthesizing Combinational Logic to Generate Probabilities: Theories and Algorithms
authors: Weikang Qian, Marc Riedel, Kia Bazargan, and David Lilja
appeared in: Advanced Techniques in Logic Synthesis, Optimizations and Applications
Sunil Khatri and Kanupriya Gulati editors, Springer Publishing, 2011.

Pdf.jpg
Paper

title: The Synthesis of Stochastic Circuits for Nanoscale Computation
authors: Weikang Qian, John Backes, and Marc Riedel
appeared in: International Journal of Nanotechnology and Molecular Computation,
vol. 1, no. 4, pp. 39–57, 2010.

Pdf.jpg
Paper

title: Two-Level Logic Synthesis for Probabilistic Computation
authors: Weikang Qian and Marc Riedel
presented at: International Workshop on Logic and Synthesis, Irvine, CA, 2010.

Pdf.jpg
Paper

Ppt.jpg
Poster

title: Synthesizing Cubes to Satisfy a Given Intersection Pattern
authors: Weikang Qian and Marc Riedel
presented at: International Workshop on Logic and Synthesis, Irvine, CA, 2010.

Pdf.jpg
Paper

Ppt.jpg
Slides

title: The Synthesis of Combinational Logic to Generate Probabilities
authors: Weikang Qian, Marc Riedel, Kia Bazargan, and David Lilja
presented at: International Conference on Computer-Aided Design, San Jose, 2009
(nominated for IEEE/ACM William J. McCalla ICCAD Best Paper Award).

Pdf.jpg
Paper

Ppt.jpg
Slides

title: A Reconfigurable Stochastic Architecture for Highly Reliable Computing
authors: Xin Li, Weikang Qian, Marc Riedel, Kia Bazargan, and David Lilja
presented at: Great Lakes Symposium on VLSI, Boston, MA, 2009.

Pdf.jpg
Paper

Ppt.jpg
Slides

title: Estimation and Optimization of Reliability of Noisy Digital Circuits
authors: Satish Sivaswamy, Kia Bazargan and Marc Riedel
presented at: International Symposium on Quality Electronic Design, San Jose, CA, 2009.

Pdf.jpg
Paper

title: The Synthesis of Robust Polynomial Arithmetic with Stochastic Logic
authors: Weikang Qian and Marc Riedel
presented at: Design Automation Conference, Anaheim, CA, 2008.

Pdf.jpg
Paper

Ppt.jpg
Slides

title: The Synthesis of Stochastic Logic to Perform Multivariate Polynomial Arithmetic
authors: Weikang Qian and Marc Riedel
presented at: International Workshop on Logic and Synthesis, Lake Tahoe, CA, 2008.

Pdf.jpg
Paper

Ppt.jpg
Poster

title: The Synthesis of Stochastic Circuits for Nanoscale Computation
authors: Weikang Qian, John Backes, and Marc Riedel
presented at: International Workshop on Logic and Synthesis, San Diego, CA, 2007.

Pdf.jpg
Paper

Ppt.jpg
Slides

Computing with Nanoscale Lattices

title: Synthesizing Logic with Percolation in Nanoscale Lattices
authors: Mustafa Altun and Marc Riedel
submitted to: ACM Journal on Emerging Technologies in Computing Systems, 2011.

Pdf.jpg
Paper

title: Logic Synthesis for Switching Lattices
authors: Mustafa Altun and Marc Riedel
submitted to: IEEE Transactions on Computers, 2011.

Pdf.jpg
Paper

title: Lattice-Based Computation of Boolean Functions
authors: Mustafa Altun and Marc Riedel
presented at: Design Automation Conference, Anaheim, CA, 2010.

Pdf.jpg
Paper

Ppt.jpg
Slides

title: Nanoscale Digital Computation Through Percolation
authors: Mustafa Altun, Marc Riedel, and Claudia Neuhauser
presented at: Design Automation Conference, San Francisco, CA, 2009.

Pdf.jpg
Paper

Ppt.jpg
Slides

Computing with Feedback

title: The Synthesis of Cyclic Dependencies with Boolean Satisfiability
authors: John Backes, and Marc Riedel
submitted to: ACM Transactions on Design Automation of Electronic Systems, 2011.


Pdf.jpg
Paper

title: The Analysis and Mapping of Cyclic Circuits with Boolean Satisfiability
authors: John Backes, Brian Fett, and Marc Riedel
submitted to: IEEE Trans. on Computer-Aided Design of Integrated Circuits and Systems, 2011.

Pdf.jpg
Paper

title: Cyclic Boolean Circuits
authors: Marc Riedel and Shuki Bruck
will appear  in: Journal of Discrete Applied Mathematics, 2011.

Pdf.jpg
Paper

title: The Synthesis of Cyclic Dependencies with Craig Interpolation
authors: John Backes and Marc Riedel
presented at: International Workshop on Logic and Synthesis, Berkeley, CA, 2009.

Pdf.jpg
Paper

Ppt.jpg
Slides

title: The Analysis of Cyclic Circuits with Boolean Satisfiability
authors: John Backes, Brian Fett, and Marc Riedel
presented at: The International Conference on Computer-Aided Design, San Jose, CA, 2008.

Pdf.jpg
Paper

Ppt.jpg
Slides

title: Timing Analysis of Cyclic Combinational Circuits
authors: Marc Riedel and Shuki Bruck
presented at: The International Workshop on Logic and Synthesis, Temecula, CA, 2004.

Pdf.jpg
Paper

Ppt.jpg
Slides

title: Cyclic Combinational Circuits
author: Marc Riedel
dissertation: Ph.D., Electrical Engineering, Caltech, 2004.

Pdf.jpg
PhD Dissertation

Pdf.jpg
Abstract

Ppt.jpg
Slides

title: The Synthesis of Cyclic Combinational Circuits
authors: Marc Riedel and Shuki Bruck
presented at: Design Automation Conference, Anahiem, CA, 2003.

Pdf.jpg
Paper

Ppt.jpg
Slides

Algorithms and Data Structures

title: Resolution Proofs as a Data Structure For Logic Synthesis
authors: John Backes and Marc Riedel
presented at: The International Workshop On Logic Syntehsis, La Jolla, CA, 2011.

Pdf.jpg
Paper

title: Reduction of Interpolants For Logic Synthesis
authors: John Backes and Marc Riedel
presented at: The International Conference on Computer-Aided Design, San Jose, CA, 2010.

Pdf.jpg
Paper

Ppt.jpg
Slides

Mathematics

title: Synthesizing Cubes to Satisfy a Given Intersection Pattern
authors: Weikang Qian, Marc Riedel, and Ivo Rosenberg
submitted to: Journal of Discrete Applied Mathematics, 2011.

Pdf.jpg
Paper

title: Uniform Approximation and Bernstein Polynomials with Coefficients in the Unit Interval
authors: Weikang Qian, Marc Riedel, and Ivo Rosenberg
appeared in: European Journal of Combinatorics, vol. 32, no. 3, pp. 448–463, 2011.

Pdf.jpg
Paper