Difference between revisions of "Papers, Theses, and Presentations"

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| [http://jsat.ewi.tudelft.nl/ Journal on Satisfiability, Boolean Modeling and Computation], 2011.
 
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Revision as of 15:26, 23 March 2012

All materials are subject to copyrights.

Computing with Molecules

title: Digital Signal Processing with Molecular Reactions
authors: Hua Jiang, Marc Riedel and Keshab Parhi
to appear in: IEEE Design & Test of Computers
Special Section on Bio-Design Automation in Synthetic Biology, 2012.

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Paper

title: Rate-Independent Constructs for Chemical Computation
authors: Phil Senum and Marc Riedel
appeared in: PLoS ONE, Volume 6, Issue 6, 2011.
Supplementary Information

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Paper

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Slides

title: Synchronous Sequential Computation with Molecular Reactions
authors: Hua Jiang, Marc Riedel and Keshab Parhi
presented at: Design Automation Conference, San Diego, CA, 2011.

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Paper

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Slides

title: Binary Counting with Chemical Reactions
authors: Aleksandra Kharam, Hua Jiang, Marc Riedel and Keshab Parhi
presented at: Pacific Symposium on Biocomputing, Hawaii, 2011.

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Paper

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Slides

title: Digital Signal Processing with Biomolecular Reactions
authors: Hua Jiang, Aleksandra Kharam, Marc Riedel and Keshab Parhi
presented at: International Conference on Computer-Aided Design, San Jose, CA, 2010.

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Paper

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Slides

title: Writing and Compiling Code into Biochemistry
authors: Adam Shea, Brian Fett, Marc Riedel, and Keshab Parhi
presented at: International Conference on Computer-Aided Design , San Jose, CA, 2009; and at
Pacific Symposium on Biocomputing, Kona, Hawaii, 2010 (see blog).

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Paper

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Slides

title: Stochastic Transient Analysis of Biochemical Systems
authors: Bin Cheng and Marc Riedel
presented at: Pacific Symposium on Biocomputing, Hawaii, 2009.

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Paper

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Slides

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M.S. Thesis

title: Module Locking in Biochemical Systems
authors: Brian Fett and Marc Riedel
presented at: International Conference on Computer-Aided Design, San Jose, CA, 2008; and at
Synthetic Biology 4.0, Hong Kong, 2008.

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Paper

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Slides

title: Synthesizing Stochasticity in Biochemical Systems
authors: Brian Fett, Shuki Bruck, and Marc Riedel
presented at: Design Automation Conference, San Diego, 2007; and at
Synthetic Biology 3.0, Zürich, 2007.

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Paper

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Slides

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M.S. Thesis

Computing about Molecules

title: Characterizing the Memory of the GAL Regulatory Network in
Saccharomyces cerevisiae
authors: Vishwesh Kulkarni, Venkatesh Kareenhalli, Ganesh Viswananthan, and Marc Riedel
to appear in: Systems and Synthetic Biology, 2011.

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Paper

Computing with Random Bit Streams

title: Synthesizing Logical Computation on Stochastic Bit Streams
authors: Weikang Qian and Marc Riedel
submitted to: Proceedings of the IEEE, 2011.
presented at: Design Automation Conference, Anaheim, CA, 2008.
Nominated as a Research Highlight, Communications of the ACM, 2010.

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Paper

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Slides

title: Transforming Probabilities with Combinational Logic
authors: Weikang Qian, Marc Riedel, Hongchao Zhou, and Jehoshua Bruck
will appear in: IEEE Trans. on Computer-Aided Design of Integrated Circuits and Systems, 2011.

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Paper

title: An Architecture for Fault-Tolerant Computation with Stochastic Logic
authors: Weikang Qian, Xin Li, Marc Riedel, Kia Bazargan, and David Lilja
appeared in: IEEE Transactions on Computers, vol. 60, no. 1, pp. 93–105, 2011.

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Paper

title: Synthesizing Combinational Logic to Generate Probabilities: Theories and Algorithms
authors: Weikang Qian, Marc Riedel, Kia Bazargan, and David Lilja
appeared in: Advanced Techniques in Logic Synthesis, Optimizations and Applications
Sunil Khatri and Kanupriya Gulati editors, Springer Publishing, 2011.

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Paper

title: Digital Yet Deliberately Random:
Synthesizing Logical Computation on.Stochastic Bit Streams
author: Weikang Qian
dissertation: Ph.D., Electrical Engineering, University of Minnesota, 2011.

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PhD Dissertation

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Slides

title: The Synthesis of Stochastic Circuits for Nanoscale Computation
authors: Weikang Qian, John Backes, and Marc Riedel
appeared in: International Journal of Nanotechnology and Molecular Computation,
vol. 1, no. 4, pp. 39–57, 2010.

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Paper

title: Two-Level Logic Synthesis for Probabilistic Computation
authors: Weikang Qian and Marc Riedel
presented at: International Workshop on Logic and Synthesis, Irvine, CA, 2010.

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Paper

title: The Synthesis of Combinational Logic to Generate Probabilities
authors: Weikang Qian, Marc Riedel, Kia Bazargan, and David Lilja
presented at: International Conference on Computer-Aided Design, San Jose, 2009
(nominated for IEEE/ACM William J. McCalla ICCAD Best Paper Award).

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Paper

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Slides

title: A Reconfigurable Stochastic Architecture for Highly Reliable Computing
authors: Xin Li, Weikang Qian, Marc Riedel, Kia Bazargan, and David Lilja
presented at: Great Lakes Symposium on VLSI, Boston, MA, 2009.

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Paper

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Slides

title: Estimation and Optimization of Reliability of Noisy Digital Circuits
authors: Satish Sivaswamy, Kia Bazargan and Marc Riedel
presented at: International Symposium on Quality Electronic Design, San Jose, CA, 2009.

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Paper

title: The Synthesis of Stochastic Logic to Perform Multivariate Polynomial Arithmetic
authors: Weikang Qian and Marc Riedel
presented at: International Workshop on Logic and Synthesis, Lake Tahoe, CA, 2008.

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Paper

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Poster

title: The Synthesis of Stochastic Circuits for Nanoscale Computation
authors: Weikang Qian, John Backes, and Marc Riedel
presented at: International Workshop on Logic and Synthesis, San Diego, CA, 2007.

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Paper

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Slides

Computing with Nanoscale Lattices

title: Synthesizing Logic with Percolation in Nanoscale Lattices
authors: Mustafa Altun and Marc Riedel
will appear in: International Journal of Nanotechnology and Molecular Computation, 2011.

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Paper

title: Logic Synthesis for Switching Lattices
authors: Mustafa Altun and Marc Riedel
will appear in: IEEE Transactions on Computers, 2011.

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Paper

title: Lattice-Based Computation of Boolean Functions
authors: Mustafa Altun and Marc Riedel
presented at: Design Automation Conference, Anaheim, CA, 2010.

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Paper

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Slides

title: Nanoscale Digital Computation Through Percolation
authors: Mustafa Altun, Marc Riedel, and Claudia Neuhauser
presented at: Design Automation Conference, San Francisco, CA, 2009.

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Paper

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Slides

Computing with Feedback

title: The Synthesis of Cyclic Dependencies with Boolean Satisfiability
authors: John Backes and Marc Riedel
submitted to: ACM Transactions on Design Automation of Electronic Systems, 2011.

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Paper

title: The Analysis and Mapping of Cyclic Circuits with Boolean Satisfiability
authors: John Backes, Brian Fett, and Marc Riedel
submitted to: Journal on Satisfiability, Boolean Modeling and Computation, 2011.

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Paper

title: Cyclic Boolean Circuits
authors: Marc Riedel and Shuki Bruck
will appear  in: Journal of Discrete Applied Mathematics, 2011.

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Paper

title: The Synthesis of Cyclic Dependencies with Craig Interpolation
authors: John Backes and Marc Riedel
presented at: The International Workshop on Logic and Synthesis, Berkeley, CA, 2009.

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Paper

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Slides

title: The Analysis of Cyclic Circuits with Boolean Satisfiability
authors: John Backes, Brian Fett, and Marc Riedel
presented at: The International Conference on Computer-Aided Design, San Jose, CA, 2008.

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Paper

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Slides

title: Timing Analysis of Cyclic Combinational Circuits
authors: Marc Riedel and Shuki Bruck
presented at: The International Workshop on Logic and Synthesis, Temecula, CA, 2004.

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Paper

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Slides

title: Cyclic Combinational Circuits
author: Marc Riedel
dissertation: Ph.D., Electrical Engineering, Caltech, 2004
(winner of Charles H. Wilts Prize for the Best Ph.D. Dissertation in EE at Caltech).

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Ph.D. Dissertation

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Slides

title: The Synthesis of Cyclic Combinational Circuits
authors: Marc Riedel and Shuki Bruck
presented at: Design Automation Conference, Anahiem, CA, 2003
(winner of DAC Best Paper Award).

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Paper

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Slides

Algorithms and Data Structures

title: Resolution Proofs as a Data Structure For Logic Synthesis
authors: John Backes and Marc Riedel
presented at: The International Workshop on Logic Synthesis, La Jolla, CA, 2011.

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Paper

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Slides

title: Reduction of Interpolants For Logic Synthesis
authors: John Backes and Marc Riedel
presented at: The International Conference on Computer-Aided Design, San Jose, CA, 2010.

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Paper

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Slides

Mathematics

title: Synthesizing Cubes to Satisfy a Given Intersection Pattern
authors: Weikang Qian, Marc Riedel, and Ivo Rosenberg
submitted to: Journal of Discrete Applied Mathematics, 2011.

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Paper

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Slides

title: Networks of Passive Oscillators
authors: Vishwesh V. Kulkarni, Marc Riedel, and Guy-Bart Stan
presented at: Allerton Conference, Urbana-Champaign, Illinois, 2011.

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Paper

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Slides

title: Uniform Approximation and Bernstein Polynomials with Coefficients in the Unit Interval
authors: Weikang Qian, Marc Riedel, and Ivo Rosenberg
appeared in: European Journal of Combinatorics, vol. 32, no. 3, pp. 448–463, 2011.

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Paper

Funding Proposals

title: Digital Yet Deliberately Random:
Synthesizing Logical Computation on Stochastic Bit Streams
Investigators: Marc Riedel, Kia Bazargan, Ramesh Harjani, and David Lilja.
Agency: National Science Foundation
Program: Software and Hardware Foundations
Award: Pending.

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Proposal

title: Digital Signal Processing with Biomolecular Reactions
Investigators: Keshab Parhi and Marc Riedel
Agency: National Science Foundation
Program: BIO Computing
Amount: $400,000
Duration: 2011 – 2014.

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Proposal

title: Computing with Things Small, Wet, and Random – Design Automation for Digital Computation with Nanoscale Technologies and Biological Processes
Investigator: Marc Riedel
Agency: National Science Foundation
Program: NSF CAREER Award
Amount: $500,000
Duration: 2009 – 2014.

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Proposal

title: Synthesizing Signal Processing Functions with Biochemical Reactions
Investigators: Keshab Parhi and Marc Riedel
Agency: National Science Foundation
Program: Computing and Communications Foundations.
Amount: $200,000
Duration: 2009 – 2011.

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Proposal

title: Exploiting Percolation and Randomness in the Concurrent Logical and Physical Design of Digital Nanoscale Circuits
Investigator: Marc Riedel
Agency: SRC Focus Center Research Program (FCRP)
Program: Functional Engineered Nano-Architectonics (FENA)
Amount: $325,000
Duration: 2006 – 2009.

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Proposal