Difference between revisions of "Arnav Solanki"

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== About Me  ==
== About Me  ==


I 'm a Postdoc in [http://www.ece.umn.edu Electrical and Computer Engineering] at the [http://www.umn.edu University of Minnesota], advised by Prof. [[Marc Riedel]]. I was born in Jaipur, India. I like learning random facts about space and biology (though I struggle remembering the latter)!
I'm a Postdoc in [http://www.ece.umn.edu Electrical and Computer Engineering] at the [http://www.umn.edu University of Minnesota], advised by Prof. [[Marc Riedel]]. I completed my Ph.D. in the same group in 2023. I was born in Jaipur, India.
 
I like learning random facts about space and biology (though I struggle remembering the latter)!


== Research ==
== Research ==
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|- valign="top"
|- valign="top"
| width="100" | '''title''':
| width="100" | '''title''':
| width="500" | [//http://mriedel.ece.umn.edu/wiki/images/e/e6/ISMCO_netMHC.pdf The Role of Hydrophobicity in Peptide-MHC Binding]
| width="500" | [[Media:Solanki chen riedel computing mathematical functions with chemical reactions via stochastic logic.pdf|Computing Mathematical Functions with Chemical Reactions via Stochastic Logic]]
|- valign="top"
|- valign="top"
| '''authors''':
| '''authors''':
| [[Arnav Solanki]], [[Marc Riedel]], [https://orion.math.iastate.edu/cornette/ James Cornette], [[Julia Udell]], Ishaan Koratkar, and [https://www.mayo.edu/research/faculty/vasmatzis-george-ph-d/bio-00027811 George Vasmatzis]
| [[Arnav Solanki]], [[Tonglin Chen]], and [[Marc Riedel]]  
|- valign="top"
|- valign="top"
| '''presented at''':
| '''appeared in''':
| [http://ismco.net/ 3rd International Symposium on Mathematical and Computational Oncology], 2021
| [https://doi.org/10.1371/journal.pone.0281574 PLOS One], Vol. 18, No. 5, 2023
|}
|}
| align="center" width="70" |
| align="center" width="70" |
<span class="plainlinks">
<span class="plainlinks">
[http://mriedel.ece.umn.edu/wiki/images/e/e6/ISMCO_netMHC.pdf http://mriedel.ece.umn.edu/wiki/images/0/04/Pdf.jpg]</span>
[https://mriedel.ece.umn.edu/wiki/images/5/57/Solanki_chen_riedel_computing_mathematical_functions_with_chemical_reactions_via_stochastic_logic.pdf http://mriedel.ece.umn.edu/wiki/images/0/04/Pdf.jpg]</span>
<br>
<br>
[//http://mriedel.ece.umn.edu/wiki/images/e/e6/ISMCO_netMHC.pdf Paper]
[[Media:Solanki_chen_riedel_computing_mathematical_functions_with_chemical_reactions_via_stochastic_logic.pdf | Paper]]
| align="center" width="70" |  
|}
 
{|
|
{| style="background:#F0E68C"
|- valign="top"
| width="100" | '''title''':
| width="500" | [[Media:Solanki-griffin-sutradhar-ganguly-riedel-neural-network-execution-using-nicked-dna-and-microfluidics.pdf|Neural Network Execution Using Nicked DNA and Microfluidics]]
|- valign="top"
| '''authors''':
| [[Arnav Solanki]], Zak Griffin, Purab Ranjan Sutradhar, [https://www.rit.edu/directory/axgeec-amlan-ganguly Amlan Ganguly], [[Marc Riedel]]
|- valign="top"
| '''under review''':
| [https://arxiv.org/abs/2211.15494 PLOS One], 2023
|}
| align="center" width="70" |
<span class="plainlinks">
<span class="plainlinks">
[http://mriedel.ece.umn.edu/wiki/images/8/8b/ISMCO2021.pdf http://mriedel.ece.umn.edu/wiki/images/3/36/Ppt.jpg]</span>
[https://mriedel.ece.umn.edu/wiki/images/7/79/Solanki-griffin-sutradhar-ganguly-riedel-neural-network-execution-using-nicked-dna-and-microfluidics.pdf http://mriedel.ece.umn.edu/wiki/images/0/04/Pdf.jpg]</span>
<br>
<br>
[http://mriedel.ece.umn.edu/wiki/images/8/8b/ISMCO2021.pdf Slides]
[[Media:Solanki-griffin-sutradhar-ganguly-riedel-neural-network-execution-using-nicked-dna-and-microfluidics.pdf | Paper]]
|}
 
{|
|
{| style="background:#F0E68C"
|- valign="top"
| width="100" | '''title''':
| width="500" | [https://mriedel.ece.umn.edu/wiki/images/b/b2/Solanki-chen-riedel-parallel-pairwise-operations-on-data-stored-in-dna-sorting-xor-shifting-and-searching.pdf Parallel Pairwise Operations on Data Stored in DNA: Sorting, XOR, Shifting, and Searching]
|- valign="top"
| '''authors''':
| [[Arnav Solanki]], [[Tonglin Chen]], and [[Marc Riedel]]
 
|- valign="top"
| '''under review in''':
| [https://www.springer.com/journal/11047 Natural Computing], 2023
|- valign="top"
| '''presented&nbsp;at''':
| [https://www.iwbdaconf.org/2019/ International Workshop on Bio-Design Automation], Cambridge, England, 2019.
|- valign="top"
| '''presented&nbsp;at''':
| [https://drops.dagstuhl.de/opus/portals/lipics/index.php?semnr=16207 International Conference on DNA Computing and Molecular Programming], 2021
|}
| width="70" align="center" |
<span class="plainlinks">[https://mriedel.ece.umn.edu/wiki/images/b/b2/Solanki-chen-riedel-parallel-pairwise-operations-on-data-stored-in-dna-sorting-xor-shifting-and-searching.pdf http://mriedel.ece.umn.edu/wiki/images/0/04/Pdf.jpg]</span>
<br>[https://mriedel.ece.umn.edu/wiki/images/b/b2/Solanki-chen-riedel-parallel-pairwise-operations-on-data-stored-in-dna-sorting-xor-shifting-and-searching.pdf Paper]
| width="70" align="center" |
<span class="plainlinks">[http://mriedel.ece.umn.edu/wiki/images/d/d5/DNA27_Presentation.pdf http://mriedel.ece.umn.edu/wiki/images/3/36/Ppt.jpg]</span>
<br> [http://mriedel.ece.umn.edu/wiki/images/d/d5/DNA27_Presentation.pdf Slides]
|}
|}


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|- valign="top"
|- valign="top"
| width="100" | '''title''':
| width="100" | '''title''':
| width="500" | [//http://mriedel.ece.umn.edu/wiki/images/e/e0/DNA27_SIMD_DNA.pdf Parallel Pairwise Operations on Data Stored in DNA: Sorting, Shifting, and Searching]
| width="500" | [//http://mriedel.ece.umn.edu/wiki/images/5/58/VCIP2021_Blind.pdf Cascadable Stochastic Logic for DNA Storage]
|- valign="top"
|- valign="top"
| '''authors''':
| '''authors''':
| [[Tonglin Chen]], [[Arnav Solanki]] and [[Marc Riedel]]
| [[Arnav Solanki]], [[Tonglin Chen]] and [[Marc Riedel]]
|- valign="top"  
|- valign="top"  
| '''presented&nbsp;at''':
| '''presented&nbsp;at''':
| [http://dna27.iopconfs.org/home 27th International Conference on DNA Computing and Molecular Programming], 2021
| [https://www.vcip2021.org/ IEEE Visual Communications and Image Processing Conference], 2021
|}
|}
| align="center" width="70" |  
| width="70" align="center" |  
<span class="plainlinks">[http://mriedel.ece.umn.edu/wiki/images/e/e0/DNA27_SIMD_DNA.pdf http://mriedel.ece.umn.edu/wiki/images/0/04/Pdf.jpg]</span>
<span class="plainlinks">[http://mriedel.ece.umn.edu/wiki/images/5/58/VCIP2021_Blind.pdf http://mriedel.ece.umn.edu/wiki/images/0/04/Pdf.jpg]</span>
<br>[http://mriedel.ece.umn.edu/wiki/images/e/e0/DNA27_SIMD_DNA.pdf Paper]
<br>[http://mriedel.ece.umn.edu/wiki/images/5/58/VCIP2021_Blind.pdf Paper]
|}
|}


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|- valign="top"
|- valign="top"
| width="100" | '''title''':
| width="100" | '''title''':
| width="500" | [[Media:Qian_Riedel_The_Synthesis_of_Stochastic_Logic_to_Perform_Multivariate_Polynomial_Arithmetic.pdf | Stochastic Computation on DNA strands through Hydroxyl Nicking]]
| width="500" | [//mriedel.ece.umn.edu/wiki/images/8/81/FNANO20_Random_Cutting.pdf Stochastic Computation on DNA strands through Hydroxyl Nicking]
|- valign="top"
|- valign="top"
| '''authors''':
| '''authors''':
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| [https://www2.cs.duke.edu/FNANO/ Foundations of Nanoscience: Self-Assembled Architectures and Devices], 2020
| [https://www2.cs.duke.edu/FNANO/ Foundations of Nanoscience: Self-Assembled Architectures and Devices], 2020
|}
|}
| align="center" width="70" |  
| width="70" align="center" |  
<span class="plainlinks">[http://mriedel.ece.umn.edu/wiki/images/8/81/FNANO20_Random_Cutting.pdf http://mriedel.ece.umn.edu/wiki/images/0/04/Pdf.jpg]</span>
<span class="plainlinks">[http://mriedel.ece.umn.edu/wiki/images/8/81/FNANO20_Random_Cutting.pdf http://mriedel.ece.umn.edu/wiki/images/0/04/Pdf.jpg]</span>
<br>[http://mriedel.ece.umn.edu/wiki/images/8/81/FNANO20_Random_Cutting.pdf Paper]
<br>[http://mriedel.ece.umn.edu/wiki/images/8/81/FNANO20_Random_Cutting.pdf Abstract]
| align="center" width="70" |  
| width="70" align="center" |  
<span class="plainlinks">[http://mriedel.ece.umn.edu/wiki/images/2/29/FNANO_poster2020.pdf http://mriedel.ece.umn.edu/wiki/images/0/04/Pdf.jpg]</span>
<span class="plainlinks">[http://mriedel.ece.umn.edu/wiki/images/2/29/FNANO_poster2020.pdf http://mriedel.ece.umn.edu/wiki/images/0/04/Pdf.jpg]</span>
<br> [http://mriedel.ece.umn.edu/wiki/images/2/29/FNANO_poster2020.pdf Poster]
<br> [http://mriedel.ece.umn.edu/wiki/images/2/29/FNANO_poster2020.pdf Poster]
|}
{|
|
{| style="background:#F0E68C"
|- valign="top"
| width="100" | '''title''':
| width="500" | [http://mriedel.ece.umn.edu/wiki/images/3/38/Chen_Solanki_Riedel_Concentration-Based-Polynomial-Calculations-on-Nicked-DNA.pdf Concentration-Based Polynomial Calculations on Nicked DNA]
|- valign="top"
| '''authors''':
| [[Tonglin Chen]] and [[Marc Riedel]]
|- valign="top"
| '''presented&nbsp;at''':
| [https://rc.signalprocessingsociety.org/conferences/icassp-2020/SPSICASSP20VID1364.html IEEE International Conference on Acoustics, Speech, and Signal Processing], 2020
|}
| width="70" align="center" |
<span class="plainlinks">[http://mriedel.ece.umn.edu/wiki/images/3/38/Chen_Solanki_Riedel_Concentration-Based-Polynomial-Calculations-on-Nicked-DNA.pdf http://mriedel.ece.umn.edu/wiki/images/0/04/Pdf.jpg]</span>
<br>[http://mriedel.ece.umn.edu/wiki/images/3/38/Chen_Solanki_Riedel_Concentration-Based-Polynomial-Calculations-on-Nicked-DNA.pdf Paper]
|}
{|
|
{| style="background:#F0E68C"
|- valign="top"
| width="100" | '''title''':
| width="500" | [[Media:Evasive_Spike_Variants_Elucidate_the_Preservation_of_T_Cell_Immune_Response_to_the_SARS-CoV-2_Omicron_Variant.pdf|Evasive Spike Variants Elucidate the Preservation of T cell Immune Response to the SARS-CoV-2 Omicron Variant]]
|- valign="top"
| '''authors''':
| [[Arnav Solanki]], [[Marc Riedel]], [https://orion.math.iastate.edu/cornette/ James Cornette], [[Julia Udell]], and [https://www.mayo.edu/research/faculty/vasmatzis-george-ph-d/bio-00027811 George Vasmatzis]
|- valign="top"
| '''appeared in''':
| [https://ieeexplore.ieee.org/document/10457533 IEEE/ACM Trans. on Computational Biology and Bioinformatics], pp. 1&ndash;11, March, 2024
|}
| width="70" align="center" |
<span class="plainlinks">
[https://mriedel.ece.umn.edu/wiki/images/1/12/Evasive_Spike_Variants_Elucidate_the_Preservation_of_T_Cell_Immune_Response_to_the_SARS-CoV-2_Omicron_Variant.pdf http://mriedel.ece.umn.edu/wiki/images/0/04/Pdf.jpg]</span>
<br>
[[Media:Evasive_Spike_Variants_Elucidate_the_Preservation_of_T_Cell_Immune_Response_to_the_SARS-CoV-2_Omicron_Variant.pdf | Paper]]
|}
{|
|
{| style="background:#F0E68C"
|- valign="top"
| width="100" | '''title''':
| width="500" | [[Media:Solanki Riedel Cornette Udell Vasmatzis Hydrophobicity Identifies False Positives and False Negatives in Peptide-MHC Binding.pdf|Hydrophobicity Identifies False Positives and False Negatives in Peptide-MHC Binding]]
|- valign="top"
| '''authors''':
| [[Arnav Solanki]], [[Marc Riedel]], [https://orion.math.iastate.edu/cornette/ James Cornette], [[Julia Udell]], and [https://www.mayo.edu/research/faculty/vasmatzis-george-ph-d/bio-00027811 George Vasmatzis]
|- valign="top"
| '''appeared in''':
| [https://www.frontiersin.org/journals/oncology/articles/10.3389/fonc.2022.1034810/full Frontiers in Oncology], Vol. 12, No. 1034810, 2022
|- valign="top"
| '''presented&nbsp;at''':
| [http://ismco.net/ 3rd International Symposium on Mathematical and Computational Oncology], 2021
|}
| align="center" width="70" |
<span class="plainlinks">
[https://mriedel.ece.umn.edu/wiki/images/1/1b/Solanki_Riedel_Cornette_Udell_Vasmatzis_Hydrophobicity_Identifies_False_Positives_and_False_Negatives_in_Peptide-MHC_Binding.pdf http://mriedel.ece.umn.edu/wiki/images/0/04/Pdf.jpg]</span>
<br>
[[Media:Solanki_Riedel_Cornette_Udell_Vasmatzis_Hydrophobicity_Identifies_False_Positives_and_False_Negatives_in_Peptide-MHC_Binding.pdf | Paper]]
| align="center" width="70" |
<span class="plainlinks">[http://mriedel.ece.umn.edu/wiki/images/8/8b/ISMCO2021.pdf http://mriedel.ece.umn.edu/wiki/images/3/36/Ppt.jpg]</span>
<br>[http://mriedel.ece.umn.edu/wiki/images/8/8b/ISMCO2021.pdf Slides]
|}
== Thesis ==
{|
|
{| style="background:#F0E68C"
|- valign="top"
| width="100" | '''title''':
| width="500" | [https://mriedel.ece.umn.edu/wiki/images/0/0a/Solanki_Carving_a_Niche_in_the_Intersection_of_Computer_Engineering_and_Molecular_Biology.pdf Carving a Niche in the Intersection of Computer Engineering and Molecular Biology]
|- valign="top"
| '''author''':
| [[Arnav Solanki]]
|- valign="top"
| '''degree''':
| Ph.D., [http://www.ece.umn.edu Electrical Engineering], [http://www.umn.edu University of Minnesota]
|-
| '''year''':
| 2023
|}
| width="70" align="center" |
<span class="plainlinks">
[https://mriedel.ece.umn.edu/wiki/images/0/0a/Solanki_Carving_a_Niche_in_the_Intersection_of_Computer_Engineering_and_Molecular_Biology.pdf http://mriedel.ece.umn.edu/wiki/images/0/04/Pdf.jpg]</span>
<br>
[https://mriedel.ece.umn.edu/wiki/images/0/0a/Solanki_Carving_a_Niche_in_the_Intersection_of_Computer_Engineering_and_Molecular_Biology.pdf Ph.D. Dissertation]
|}
|}


== Contact ==
== Contact ==
Email me at solan053@umn.edu
Email me at solan053@umn.edu

Latest revision as of 04:13, 10 April 2024

Arnav Solanki profile image.jpg

About Me

I'm a Postdoc in Electrical and Computer Engineering at the University of Minnesota, advised by Prof. Marc Riedel. I completed my Ph.D. in the same group in 2023. I was born in Jaipur, India.

I like learning random facts about space and biology (though I struggle remembering the latter)!

Research

My research focus is on Bioinformatics, Cancer Genomics, and DNA computing.

Papers

title: Computing Mathematical Functions with Chemical Reactions via Stochastic Logic
authors: Arnav Solanki, Tonglin Chen, and Marc Riedel
appeared in: PLOS One, Vol. 18, No. 5, 2023

Pdf.jpg
Paper

title: Neural Network Execution Using Nicked DNA and Microfluidics
authors: Arnav Solanki, Zak Griffin, Purab Ranjan Sutradhar, Amlan Ganguly, Marc Riedel
under review: PLOS One, 2023

Pdf.jpg
Paper

title: Parallel Pairwise Operations on Data Stored in DNA: Sorting, XOR, Shifting, and Searching
authors: Arnav Solanki, Tonglin Chen, and Marc Riedel
under review in: Natural Computing, 2023
presented at: International Workshop on Bio-Design Automation, Cambridge, England, 2019.
presented at: International Conference on DNA Computing and Molecular Programming, 2021

Pdf.jpg
Paper

Ppt.jpg
Slides

title: Cascadable Stochastic Logic for DNA Storage
authors: Arnav Solanki, Tonglin Chen and Marc Riedel
presented at: IEEE Visual Communications and Image Processing Conference, 2021

Pdf.jpg
Paper

title: Stochastic Computation on DNA strands through Hydroxyl Nicking
authors: Arnav Solanki, Tonglin Chen and Marc Riedel
presented at: Foundations of Nanoscience: Self-Assembled Architectures and Devices, 2020

Pdf.jpg
Abstract

Pdf.jpg
Poster

title: Concentration-Based Polynomial Calculations on Nicked DNA
authors: Tonglin Chen and Marc Riedel
presented at: IEEE International Conference on Acoustics, Speech, and Signal Processing, 2020

Pdf.jpg
Paper

title: Evasive Spike Variants Elucidate the Preservation of T cell Immune Response to the SARS-CoV-2 Omicron Variant
authors: Arnav Solanki, Marc Riedel, James Cornette, Julia Udell, and George Vasmatzis
appeared in: IEEE/ACM Trans. on Computational Biology and Bioinformatics, pp. 1–11, March, 2024

Pdf.jpg
Paper

title: Hydrophobicity Identifies False Positives and False Negatives in Peptide-MHC Binding
authors: Arnav Solanki, Marc Riedel, James Cornette, Julia Udell, and George Vasmatzis
appeared in: Frontiers in Oncology, Vol. 12, No. 1034810, 2022
presented at: 3rd International Symposium on Mathematical and Computational Oncology, 2021

Pdf.jpg
Paper

Ppt.jpg
Slides

Thesis

title: Carving a Niche in the Intersection of Computer Engineering and Molecular Biology
author: Arnav Solanki
degree: Ph.D., Electrical Engineering, University of Minnesota
year: 2023

Pdf.jpg
Ph.D. Dissertation

Contact

Email me at solan053@umn.edu

Retrieved from "http://mriedel.ece.umn.edu/wiki/index.php?title=Arnav_Solanki&oldid=333484"