Arnav Solanki

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Arnav Solanki profile image.jpg

About Me

I'm a Postdoc in Electrical and Computer Engineering at the University of Minnesota, advised by Prof. Marc Riedel. I completed my Ph.D. in the same group in 2023. I was born in Jaipur, India.

I like learning random facts about space and biology (though I struggle remembering the latter)!

Research

My research focus is on Bioinformatics, Cancer Genomics, and DNA computing.

Papers

title: Computing Mathematical Functions with Chemical Reactions via Stochastic Logic
authors: Arnav Solanki, Tonglin Chen, and Marc Riedel
appeared in: PLOS One, Vol. 18, No. 5, 2023

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Paper

title: Neural Network Execution Using Nicked DNA and Microfluidics
authors: Arnav Solanki, Zak Griffin, Purab Ranjan Sutradhar, Amlan Ganguly, Marc Riedel
under review: PLOS One, 2023

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Paper

title: Parallel Pairwise Operations on Data Stored in DNA: Sorting, XOR, Shifting, and Searching
authors: Arnav Solanki, Tonglin Chen, and Marc Riedel
under review in: Natural Computing, 2023
presented at: International Workshop on Bio-Design Automation, Cambridge, England, 2019.
presented at: International Conference on DNA Computing and Molecular Programming, 2021

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Paper

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Slides

title: Cascadable Stochastic Logic for DNA Storage
authors: Arnav Solanki, Tonglin Chen and Marc Riedel
presented at: IEEE Visual Communications and Image Processing Conference, 2021

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Paper

title: Stochastic Computation on DNA strands through Hydroxyl Nicking
authors: Arnav Solanki, Tonglin Chen and Marc Riedel
presented at: Foundations of Nanoscience: Self-Assembled Architectures and Devices, 2020

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Abstract

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Poster

title: Concentration-Based Polynomial Calculations on Nicked DNA
authors: Tonglin Chen and Marc Riedel
presented at: IEEE International Conference on Acoustics, Speech, and Signal Processing, 2020

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Paper

title: Evasive Spike Variants Elucidate the Preservation of T cell Immune Response to the SARS-CoV-2 Omicron Variant
authors: Arnav Solanki, Marc Riedel, James Cornette, Julia Udell, and George Vasmatzis
under review: IEEE/ACM Trans. on Computational Biology and Bioinformatics, 2023

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Paper

title: Hydrophobicity Identifies False Positives and False Negatives in Peptide-MHC Binding
authors: Arnav Solanki, Marc Riedel, James Cornette, Julia Udell, and George Vasmatzis
appeared in: Frontiers in Oncology, Vol. 12, No. 1034810, 2022
presented at: 3rd International Symposium on Mathematical and Computational Oncology, 2021

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Paper

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Slides

Thesis

title: Carving a Niche in the Intersection of Computer Engineering and Molecular Biology
author: Arnav Solanki
degree: Ph.D., Electrical Engineering, University of Minnesota
year: 2023

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Ph.D. Dissertation

Contact

Email me at solan053@umn.edu